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STRINGSTRING
Solyc12g007180.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g007180.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g007180.1.1annotation not available (498 aa)    
Predicted Functional Partners:
RBR1
Retinoblastoma-related protein 1 (1018 aa)
      
 
  0.930
Solyc12g098160.1.1
annotation not available (1140 aa)
      
 
  0.912
Solyc01g067560.2.1
annotation not available (1209 aa)
      
 
  0.912
101258729
Timeless family protein (1294 aa)
      
   
  0.763
101264796
ARM repeat superfamily protein (1222 aa)
      
        0.757
101262474
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (707 aa)
      
        0.744
Solyc06g073780.2.1
Structural maintenance of chromosomes protein; SMC3 (1229 aa)
      
      0.689
101268250
DNA helicase; Minichromosome maintenance (MCM2/3/5) family protein; Belongs to the MCM family (787 aa)
      
        0.687
101243636
DNA helicase; Minichromosome maintenance (MCM2/3/5) family protein; Belongs to the MCM family (718 aa)
      
        0.686
Solyc02g091120.2.1
DNA LIGASE 6 (1473 aa)
      
      0.682
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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