STRINGSTRING
Solyc12g008680.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g008680.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g008680.1.1Uncharacterized protein (242 aa)    
Predicted Functional Partners:
Solyc05g009560.2.1
Uncharacterized protein (223 aa)
     
  0.969
Solyc04g007330.1.1
Uncharacterized protein (596 aa)
       
 
  0.890
Solyc05g015380.2.1
Uncharacterized protein (135 aa)
       
 
  0.882
Solyc05g015370.2.1
Uncharacterized protein (221 aa)
       
 
  0.882
Solyc05g015360.2.1
Uncharacterized protein (105 aa)
       
 
  0.882
RAD51
DNA repair protein RAD51 homolog ; Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Underwinds duplex DNA (By similarity) (342 aa)
     
  0.780
Solyc09g082790.2.1
Uncharacterized protein (334 aa)
     
  0.761
Solyc05g050960.2.1
Uncharacterized protein (213 aa)
     
  0.656
Solyc05g050950.2.1
Uncharacterized protein (123 aa)
     
  0.656
Solyc11g072610.1.1
Uncharacterized protein (371 aa)
     
  0.628
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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