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STRINGSTRING
Solyc12g008870.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g008870.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g008870.1.1annotation not available (343 aa)    
Predicted Functional Partners:
101263464
annotation not available (521 aa)
     
 
  0.940
Solyc07g017640.2.1
annotation not available (410 aa)
     
 
  0.842
Solyc07g017350.1.1
annotation not available (42 aa)
     
 
  0.842
Solyc07g039340.2.1
Protein kinase superfamily protein (1033 aa)
       
 
  0.764
101247822
Unknown protein; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G49055.1); Has 71940 Blast hits to 38124 proteins in 2481 species- Archae - 1358; Bacteria - 12126; Metazoa - 32861; Fungi - 6786; Plants - 4024; Viruses - 195; Ot /.../karyotes - 14590 (source- NCBI BLink) (686 aa)
           
  0.739
Solyc08g067990.1.1
annotation not available (803 aa)
           
  0.642
101251304
annotation not available (762 aa)
           
  0.642
101245103
annotation not available (310 aa)
       
      0.616
Solyc08g067460.1.1
annotation not available (178 aa)
       
      0.616
101250425
annotation not available (196 aa)
       
      0.616
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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