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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc12g009040.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g009040.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g009040.1.1annotation not available (718 aa)    
Predicted Functional Partners:
Solyc12g006930.1.1
Acyl-[acyl-carrier-protein] hydrolase; Plays an essential role in chain termination during de novo fatty acid synthesis (421 aa)
         
  0.852
101246288
annotation not available (661 aa)
   
0.838
101257097
annotation not available (658 aa)
   
0.835
Solyc08g008310.2.1
annotation not available (597 aa)
   
0.831
LysRS
Lysine--tRNA ligase ; Belongs to the class-II aminoacyl-tRNA synthetase family (588 aa)
         
  0.804
101251001
Lysine--tRNA ligase; lysyl-tRNA synthetase 1 (605 aa)
         
  0.804
101243628
Lysine--tRNA ligase; Lysyl-tRNA synthetase, class II (584 aa)
         
  0.804
Solyc10g079770.1.1
annotation not available (445 aa)
     
 
  0.776
101255254
annotation not available (826 aa)
     
 
  0.776
101249020
annotation not available (723 aa)
   
0.773
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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