STRINGSTRING
Solyc12g009390.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g009390.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g009390.1.1Uncharacterized protein (429 aa)    
Predicted Functional Partners:
Solyc04g007280.2.1
Uncharacterized protein (994 aa)
       
 
  0.988
Solyc07g008160.2.1
Uncharacterized protein (1481 aa)
       
 
  0.988
Solyc02g070810.2.1
Uncharacterized protein (1946 aa)
       
      0.988
Solyc01g090670.2.1
Uncharacterized protein (758 aa)
       
      0.988
Solyc08g066580.2.1
Uncharacterized protein (719 aa)
       
 
  0.952
Solyc12g049410.1.1
Uncharacterized protein (1016 aa)
       
 
  0.951
HOS1
Ubiquitin-protein ligase-like protein (960 aa)
       
      0.951
Solyc01g102540.2.1
Uncharacterized protein (1106 aa)
       
      0.951
Solyc04g016240.2.1
Uncharacterized protein (862 aa)
       
 
  0.940
Solyc06g053590.2.1
Uncharacterized protein (599 aa)
       
      0.935
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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