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STRINGSTRING
101252958 protein (Solanum lycopersicum) - STRING interaction network
"101252958" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
101252958annotation not available (861 aa)    
Predicted Functional Partners:
101250005
Uncharacterized protein; RINT-1 / TIP-1 family (790 aa)
       
 
  0.992
Solyc03g082680.2.1
Uncharacterized protein; CONTAINS InterPro DOMAIN/s- Secretory pathway Sec39 (InterPro-IPR013244); Has 1807 Blast hits to 1807 proteins in 277 species- Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source- NCBI BLink) (2410 aa)
     
 
  0.989
101268430
Sec20 family protein (293 aa)
       
 
  0.980
Solyc05g043350.2.1
annotation not available (537 aa)
     
 
  0.975
Solyc05g043340.2.1
annotation not available (214 aa)
     
 
  0.975
101249911
annotation not available (317 aa)
       
 
  0.941
101247988
annotation not available (280 aa)
       
 
  0.941
101254812
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- COG4 transport (InterPro-IP /.../7), Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- Pentatricopeptide repeat (PPR) superfamily protein (TAIR-AT5G46100.1); Has 26268 Blast hits to 8959 proteins in 289 species- Archae - 0; Bacteria - 3; Metazoa - 247; Fungi - 222; Plants - 25350; Viruses - 0; Other Euk [...] (736 aa)
           
  0.763
101249800
Zincin-like metalloproteases family protein (710 aa)
           
  0.745
101266478
Gamma-soluble NSF attachment protein (295 aa)
       
      0.675
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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