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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc12g014070.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g014070.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g014070.1.1annotation not available (535 aa)    
Predicted Functional Partners:
Solyc03g115150.2.1
annotation not available (647 aa)
     
 
  0.571
101249958
annotation not available (725 aa)
     
   
  0.558
101249576
Uncharacterized protein; Galactose oxidase/kelch repeat superfamily protein (415 aa)
           
  0.553
Solyc03g006840.2.1
annotation not available (692 aa)
           
  0.552
Solyc02g069360.1.1
Eukaryotic aspartyl protease family protein; Belongs to the peptidase A1 family (485 aa)
           
  0.552
101254943
Histone deacetylase 1; Belongs to the histone deacetylase family. HD Type 1 subfamily (498 aa)
     
 
  0.486
101247926
Uncharacterized protein; Phosphoglycerate/bisphosphoglycerate mutase family protein (509 aa)
           
  0.455
Solyc05g017990.2.1
Uncharacterized protein; tRNA/rRNA methyltransferase (SpoU) family protein (449 aa)
           
  0.455
101250801
annotation not available (504 aa)
       
 
  0.446
Solyc03g079910.2.1
annotation not available (549 aa)
       
 
  0.446
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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