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STRINGSTRING
ppc1 protein (Solanum lycopersicum) - STRING interaction network
"ppc1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppc1Uncharacterized protein; Phosphoenolpyruvate carboxylase 1 (965 aa)    
Predicted Functional Partners:
101267346
Uncharacterized protein; Pyruvate orthophosphate dikinase (965 aa)
         
  0.981
mdh
Malate dehydrogenase (442 aa)
     
 
  0.945
LOC543812
Uncharacterized protein; Phosphoenolpyruvate carboxykinase (662 aa)
     
 
  0.936
101260072
annotation not available (452 aa)
         
  0.927
mMDH
Malate dehydrogenase (346 aa)
         
  0.915
Solyc01g073740.2.1
annotation not available (474 aa)
     
 
  0.915
cMDH
Malate dehydrogenase (334 aa)
     
 
  0.915
101253131
annotation not available (332 aa)
     
 
  0.914
101258530
annotation not available (342 aa)
         
  0.914
101249428
Peroxisomal NAD-malate dehydrogenase 1 (352 aa)
     
 
  0.913
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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