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Solyc12g016220.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g016220.1.1" - Nucleotide binding site-leucine rich repeat protein in Solanum lycopersicum
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g016220.1.1Nucleotide binding site-leucine rich repeat protein (1021 aa)    
Predicted Functional Partners:
Solyc09g011060.2.1
Clade IV lectin receptor kinase (832 aa)
     
  0.830
Solyc09g059430.2.1
Uncharacterized protein (254 aa)
       
  0.816
Solyc12g098440.1.1
Uncharacterized protein (313 aa)
       
    0.808
Solyc06g083390.2.1
Uncharacterized protein (250 aa)
       
    0.808
Solyc11g012010.1.1
Uncharacterized protein (224 aa)
         
    0.800
Solyc07g039550.2.1
Uncharacterized protein (1190 aa)
       
  0.742
Solyc01g110990.2.1
Uncharacterized protein (1111 aa)
       
  0.742
Solyc12g035870.1.1
Uncharacterized protein (398 aa)
       
  0.719
CNOT1
CCR4-NOT transcription complex subunit 1 (2411 aa)
     
  0.694
Solyc09g090660.2.1
Uncharacterized protein (521 aa)
       
  0.694
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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