STRINGSTRING
PKv protein (Solanum lycopersicum) - STRING interaction network
"PKv" - Viroid symptom modulation protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PKvViroid symptom modulation protein (467 aa)    
Predicted Functional Partners:
LOC543627
PSTVd RNA-biding protein, Virp1; PSTVd RNA-binding protein Virp1a; PSTVd RNA-binding protein Virp1b; PSTVd RNA-binding protein Virp1c; PSTVd RNA-binding protein Virp1d (602 aa)
       
 
  0.700
GABA-TP2
Gamma aminobutyrate transaminase 2 ; Transaminase that degrades gamma-amino butyric acid (GABA) and uses pyruvate or glyoxylate as amino-group acceptor. Cannot use beta-alanine, ornithine, acetylornithine, serine, glycine, asparagine, glutamine, glutamate, valine, leucine, isoleucine, methionine, phenylalanine, histidine, lysine, arginine, aspartate, threonine, tyrosine, tryptophan, proline, or cysteine as amino donors. May be responsible for establishing the GABA gradient in the carpel (458 aa)
           
  0.690
Solyc02g068340.2.1
Uncharacterized protein (1265 aa)
       
 
  0.479
MA-1
26S protease regulatory subunit 6A homolog ; The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex (By similarity) (423 aa)
           
  0.469
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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