• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc12g027740.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g027740.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g027740.1.1annotation not available (116 aa)    
Predicted Functional Partners:
101257446
annotation not available (258 aa)
           
  0.875
Solyc06g084500.2.1
Uncharacterized protein; CONTAINS InterPro DOMAIN/s- rRNA processing (InterPro-IPR013730); Has 898 Blast hits to 687 proteins in 142 species- Archae - 2; Bacteria - 28; Metazoa - 200; Fungi - 99; Plants - 63; Viruses - 0; Other Eukaryotes - 506 (source- NCBI BLink) (172 aa)
           
  0.724
Solyc04g072680.1.1
annotation not available (578 aa)
           
  0.701
Solyc04g072670.2.1
annotation not available (760 aa)
           
  0.701
101255868
annotation not available (551 aa)
           
  0.693
Solyc09g075740.1.1
annotation not available (238 aa)
           
  0.693
101266656
annotation not available (531 aa)
           
  0.693
101254100
annotation not available (231 aa)
           
  0.693
101256771
Uncharacterized protein; IQ-domain 32 (862 aa)
           
  0.656
101266446
annotation not available (315 aa)
           
  0.615
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (17%) [HD]