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rpl23-A protein (Solanum lycopersicum) - STRING interaction network
"rpl23-A" - 50S ribosomal protein L23, chloroplastic in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl23-A50S ribosomal protein L23, chloroplastic; Binds to 23S rRNA (82 aa)    
Predicted Functional Partners:
Solyc11g021130.1.1
annotation not available (285 aa)
   
 
  0.989
Solyc04g049260.1.1
annotation not available (166 aa)
   
 
  0.989
rps16
30S ribosomal protein S16 (132 aa)
     
 
  0.984
Solyc04g079790.2.1
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family (237 aa)
   
 
  0.973
DDTFR19
60S ribosomal protein L29; Ripening regulated protein DDTFR19 ; Belongs to the eukaryotic ribosomal protein eL29 family (60 aa)
     
 
  0.971
Solyc07g008270.2.1
Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family (87 aa)
   
 
  0.968
rpl22
30S ribosomal protein S3, chloroplastic ; Belongs to the universal ribosomal protein uS3 family (352 aa)
   
 
  0.962
RPL8
60S ribosomal protein L8 (260 aa)
   
  0.955
Solyc12g062630.1.1
annotation not available (134 aa)
   
 
  0.949
3950460
30S ribosomal protein S19, chloroplastic; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA (49 aa)
   
 
  0.948
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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