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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc12g035790.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g035790.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g035790.1.1annotation not available (486 aa)    
Predicted Functional Partners:
Solyc11g021130.1.1
annotation not available (285 aa)
 
 
  0.975
Solyc04g049260.1.1
annotation not available (166 aa)
 
 
  0.974
RPE1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1678 aa)
   
 
  0.969
101248675
annotation not available (319 aa)
   
 
  0.892
101259186
annotation not available (144 aa)
   
 
  0.879
101251196
annotation not available (71 aa)
   
 
  0.871
Solyc11g012150.1.1
Uncharacterized protein; Transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (500 aa)
     
 
  0.862
101244156
Uncharacterized protein; DNA-directed RNA polymerase, RBP11-like (116 aa)
     
 
  0.860
101264221
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (114 aa)
     
 
  0.859
Solyc10g007650.2.1
annotation not available (52 aa)
     
 
  0.855
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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