STRINGSTRING
Solyc12g038030.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g038030.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g038030.1.1Uncharacterized protein (93 aa)    
Predicted Functional Partners:
Solyc01g087500.2.1
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1478 aa)
   
  0.795
Solyc09g090660.2.1
Uncharacterized protein (521 aa)
     
  0.753
Solyc12g008370.1.1
Uncharacterized protein (495 aa)
     
  0.750
Solyc11g017220.1.1
Uncharacterized protein (418 aa)
     
  0.750
Solyc00g065630.1.1
Annotation not available (529 aa)
     
  0.750
Solyc11g067010.1.1
Uncharacterized protein (117 aa)
     
  0.720
Solyc09g009300.2.1
Uncharacterized protein (197 aa)
     
  0.720
UBI3
Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin tha [...] (156 aa)
       
  0.712
Solyc07g008880.2.1
Uncharacterized protein (2384 aa)
     
  0.711
Solyc06g043160.1.1
Uncharacterized protein (52 aa)
     
  0.711
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (22%) [HD]