STRINGSTRING
Solyc12g038080.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g038080.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g038080.1.1Uncharacterized protein (74 aa)    
Predicted Functional Partners:
Solyc01g011480.1.1
Uncharacterized protein (85 aa)
   
          0.526
Solyc10g017940.1.1
Uncharacterized protein (200 aa)
   
          0.524
psbB
Photosystem II CP47 chlorophyll apoprotein ; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water-plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation (553 aa)
   
          0.523
Solyc07g021270.1.1
Uncharacterized protein (109 aa)
   
          0.520
Solyc12g027550.1.1
Uncharacterized protein (72 aa)
   
          0.519
Solyc07g032450.1.1
Uncharacterized protein (69 aa)
   
          0.519
Solyc01g050020.1.1
Uncharacterized protein (94 aa)
   
          0.519
Solyc00g277510.1.1
Annotation not available (66 aa)
   
          0.519
Solyc01g044250.1.1
Uncharacterized protein (73 aa)
   
          0.517
Solyc10g047410.1.1
Uncharacterized protein (298 aa)
   
          0.513
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (10%) [HD]