STRINGSTRING
Solyc12g038370.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g038370.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g038370.1.1Uncharacterized protein (229 aa)    
Predicted Functional Partners:
Solyc03g111680.2.1
Uncharacterized protein (1020 aa)
     
 
  0.931
Solyc02g072090.1.1
Uncharacterized protein (1213 aa)
     
 
  0.931
Solyc01g102810.2.1
Uncharacterized protein (1273 aa)
       
 
  0.924
Solyc01g087500.2.1
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1478 aa)
   
 
  0.760
RPA32b
RPA32b (280 aa)
     
      0.747
RPA32a
RPA32a (272 aa)
     
      0.747
Solyc10g084700.1.1
Uncharacterized protein (267 aa)
   
   
  0.713
Solyc01g058530.2.1
Uncharacterized protein (120 aa)
   
   
  0.713
rps18
30S ribosomal protein S18, chloroplastic (101 aa)
   
   
  0.713
Solyc12g062630.1.1
Uncharacterized protein (134 aa)
   
 
  0.703
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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