STRINGSTRING
Solyc12g040810.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g040810.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g040810.1.1Uncharacterized protein (288 aa)    
Predicted Functional Partners:
Solyc04g076430.2.1
Uncharacterized protein (704 aa)
     
  0.981
Solyc01g111410.2.1
Uncharacterized protein (420 aa)
     
  0.980
FTA
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha ; Essential subunit of both the farnesyltransferase and the geranylgeranyltransferase complex. Contributes to the transfer of a farnesyl or geranylgeranyl moiety from farnesyl or geranylgeranyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X (346 aa)
     
  0.950
Solyc02g082730.2.1
Uncharacterized protein (552 aa)
       
  0.932
Solyc12g017570.1.1
Uncharacterized protein (444 aa)
       
  0.801
Solyc08g015860.2.1
Uncharacterized protein (444 aa)
       
  0.801
GDI1
Rab-GDP dissociation inhibitor (445 aa)
       
  0.801
Rab1A
Small GTP-binding protein (203 aa)
     
 
  0.687
Solyc05g053940.2.1
Uncharacterized protein (203 aa)
     
 
  0.687
Rab1C
Small GTP-binding protein (203 aa)
     
 
  0.687
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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