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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc12g055780.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g055780.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g055780.1.1annotation not available (370 aa)    
Predicted Functional Partners:
101255963
Floral homeotic protein (HUA1) (497 aa)
       
 
  0.762
Solyc02g014130.1.1
annotation not available (1396 aa)
       
 
  0.636
Solyc12g017860.1.1
annotation not available (940 aa)
     
   
  0.566
SKIV2L2
annotation not available (936 aa)
     
   
  0.566
cdc5
CDC5-like protein (987 aa)
     
      0.553
101249326
RS2-interacting KH protein (593 aa)
           
  0.520
101263262
annotation not available (674 aa)
           
  0.515
Solyc12g095960.1.1
KH domain-containing protein (288 aa)
     
 
  0.485
Solyc09g064840.2.1
annotation not available (1391 aa)
       
 
  0.473
Solyc04g080670.2.1
Inositol-pentakisphosphate 2-kinase; Phosphorylates Ins(1,3,4,5,6)P5 at position 2 to form Ins(1,2,3,4,5,6)P6 (InsP6 or phytate) (381 aa)
     
   
  0.431
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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