STRINGSTRING
Solyc12g055930.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g055930.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g055930.1.1Uncharacterized protein (348 aa)    
Predicted Functional Partners:
Solyc10g050850.1.1
Uncharacterized protein (342 aa)
   
  0.996
Solyc06g069550.1.1
UDP-glucose 6-dehydrogenase (480 aa)
   
 
  0.966
Solyc03g115380.1.1
UDP-glucose 6-dehydrogenase (480 aa)
   
 
  0.966
Solyc02g088690.2.1
UDP-glucose 6-dehydrogenase (316 aa)
   
 
  0.966
Solyc02g067080.2.1
UDP-glucose 6-dehydrogenase (509 aa)
   
 
  0.966
Solyc01g081520.2.1
Mitochondrial small ribosomal subunit protein (607 aa)
   
 
  0.958
Solyc11g011960.1.1
Uncharacterized protein (477 aa)
   
 
  0.955
Solyc05g054060.2.1
Uncharacterized protein (477 aa)
   
 
  0.955
Solyc10g007480.2.1
Uncharacterized protein (590 aa)
   
 
0.946
Solyc07g062130.2.1
Uncharacterized protein (674 aa)
   
 
0.945
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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