STRINGSTRING
Solyc12g057010.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g057010.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g057010.1.1Uncharacterized protein (520 aa)    
Predicted Functional Partners:
Solyc12g013630.1.1
Uncharacterized protein (628 aa)
   
 
  0.734
Solyc09g091660.2.1
Uncharacterized protein (1440 aa)
   
 
  0.734
Solyc08g067620.2.1
Uncharacterized protein (1453 aa)
   
 
  0.734
Solyc11g068830.1.1
Uncharacterized protein (477 aa)
         
  0.550
Solyc03g083440.2.1
Uncharacterized protein (2226 aa)
   
   
  0.539
Solyc12g006360.1.1
Multidrug and toxic compound extrusion protein (503 aa)
         
  0.536
Solyc10g080080.1.1
Thioredoxin reductase (543 aa)
   
 
  0.504
Solyc04g016010.2.1
Uncharacterized protein (537 aa)
   
 
  0.504
Solyc02g044050.1.1
Uncharacterized protein (491 aa)
         
  0.495
Solyc01g087500.2.1
DNA topoisomerase 2 ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1478 aa)
         
  0.489
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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