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STRINGSTRING
Solyc12g062260.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g062260.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g062260.1.1annotation not available (189 aa)    
Predicted Functional Partners:
Solyc06g050230.2.1
Dual specificity protein phosphatase (DsPTP1) family protein (193 aa)
     
 
  0.867
ptpkis1
Protein tyrosine phosphatase (370 aa)
     
 
  0.772
101266501
annotation not available (372 aa)
     
 
  0.772
Solyc09g098040.2.1
Uncharacterized protein; Catalytics;carbohydrate kinases;phosphoglucan, water dikinases (1198 aa)
     
   
  0.766
Solyc06g009220.2.1
Uncharacterized protein; Isoamylase 3 (739 aa)
     
   
  0.763
101264184
Uncharacterized protein; Calcium/lipid-binding (CaLB) phosphatase (413 aa)
       
 
  0.721
GWD
Uncharacterized protein; Glucan water dikinase (1465 aa)
     
   
  0.679
101268619
annotation not available (396 aa)
     
 
  0.633
SNF4
SNF4 (373 aa)
     
 
  0.633
101251876
Uncharacterized protein; Cystathionine beta-synthase (CBS) family protein (420 aa)
     
 
  0.633
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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