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STRINGSTRING
cen12_5 protein (Solanum lycopersicum) - STRING interaction network
"cen12_5" - Putative transcription regulator CPL1 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cen12_5Putative transcription regulator CPL1 (1227 aa)    
Predicted Functional Partners:
Solyc11g012150.1.1
Uncharacterized protein; Transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (500 aa)
     
 
  0.935
Solyc03g121190.2.1
annotation not available (77 aa)
           
  0.846
101257024
Uncharacterized protein; Transcription initiation factor IIF, beta subunit (276 aa)
     
 
  0.797
101263130
Uncharacterized protein; Transcription initiation factor IIF, beta subunit (265 aa)
     
 
  0.797
Solyc10g080000.1.1
annotation not available (129 aa)
     
 
  0.782
Solyc10g079990.1.1
annotation not available (192 aa)
     
 
  0.782
101266576
annotation not available (312 aa)
     
 
  0.782
101246877
annotation not available (311 aa)
     
 
  0.782
BAC19.3
BAC19.3 (425 aa)
     
 
  0.782
101248675
annotation not available (319 aa)
     
 
  0.775
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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