STRINGSTRING
Solyc12g088340.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g088340.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g088340.1.1Uncharacterized protein (453 aa)    
Predicted Functional Partners:
DDB1
DNA damage-binding protein 1 ; Component of light signal transduction machinery. Involved in fruit pigmentation and fruit nutritional quality. Acts as a negative regulator of fruit pigmentation. Probably acts by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes. Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5 (1095 aa)
       
  0.985
Solyc09g031610.2.1
Uncharacterized protein (587 aa)
         
  0.859
LOC543616
CSN5 protein (367 aa)
       
  0.808
Solyc06g073150.2.1
Uncharacterized protein (367 aa)
       
  0.808
COP1
COP1 homolog (677 aa)
       
 
0.800
Solyc11g011980.1.1
Uncharacterized protein (672 aa)
       
    0.800
Solyc11g005190.1.1
COP1-like protein (360 aa)
         
    0.800
Det1
Light-mediated development protein DET1 ; Component of light signal transduction machinery. Involved in fruit pigmentation and fruit nutritional quality. Acts as a negative regulator of fruit pigmentation. Probably acts by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes. Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5 (523 aa)
         
    0.800
Solyc02g070460.2.1
Uncharacterized protein (802 aa)
       
  0.754
cul4
Cullin 4 (785 aa)
       
  0.754
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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