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STRINGSTRING
Solyc12g088590.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g088590.1.1" - annotation not available in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g088590.1.1annotation not available (83 aa)    
Predicted Functional Partners:
Solyc04g049120.2.1
Uncharacterized protein; Duplicated homeodomain-like superfamily protein (1580 aa)
     
 
  0.863
101255653
Uncharacterized protein; Transducin/WD40 repeat-like superfamily protein (769 aa)
     
 
  0.796
cdc5
CDC5-like protein (987 aa)
     
      0.662
101251648
annotation not available (430 aa)
     
 
  0.655
101254943
Histone deacetylase 1; Belongs to the histone deacetylase family. HD Type 1 subfamily (498 aa)
     
 
  0.655
101258377
annotation not available (471 aa)
     
 
  0.655
101256864
annotation not available (449 aa)
     
 
  0.655
101257469
DNA-binding HORMA family protein (208 aa)
     
 
  0.638
101267195
Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle (191 aa)
       
 
  0.610
101262209
annotation not available (934 aa)
     
 
  0.606
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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