STRINGSTRING
Solyc12g088680.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g088680.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g088680.1.1Uncharacterized protein (160 aa)    
Predicted Functional Partners:
Solyc12g006010.1.1
Uncharacterized protein (99 aa)
     
  0.994
Solyc09g091890.2.1
Uncharacterized protein (91 aa)
     
  0.994
sumo
SUMO protein (105 aa)
     
  0.994
Solyc07g064880.2.1
Small ubiquitin-related modifier (99 aa)
     
  0.994
Solyc07g049360.2.1
Uncharacterized protein (96 aa)
     
  0.994
Solyc01g109960.2.1
Uncharacterized protein (650 aa)
     
  0.979
LOC543732
Ubiquitin activating enzyme (318 aa)
     
  0.975
Solyc03g019730.2.1
Uncharacterized protein (346 aa)
     
  0.975
pcna
Proliferating cell nuclear antigen ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
     
  0.975
Solyc11g069160.1.1
Uncharacterized protein (877 aa)
     
  0.974
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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