STRINGSTRING
Solyc12g089010.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g089010.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g089010.1.1Uncharacterized protein (810 aa)    
Predicted Functional Partners:
Solyc09g090660.2.1
Uncharacterized protein (521 aa)
     
  0.982
Solyc02g078970.2.1
Uncharacterized protein (570 aa)
     
  0.980
cdc5
CDC5-like protein (987 aa)
     
  0.977
Solyc06g036580.2.1
Uncharacterized protein (633 aa)
     
  0.954
Solyc05g054880.2.1
Uncharacterized protein (549 aa)
     
  0.954
Solyc02g084340.1.1
Uncharacterized protein (451 aa)
     
  0.865
Solyc09g072570.2.1
Uncharacterized protein (536 aa)
     
  0.864
Solyc06g083890.2.1
Uncharacterized protein (536 aa)
     
  0.864
Solyc08g068120.1.1
Uncharacterized protein (1451 aa)
   
  0.854
Solyc06g069480.2.1
Uncharacterized protein (2088 aa)
     
  0.852
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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