STRINGSTRING
EXPA8 protein (Solanum lycopersicum) - STRING interaction network
"EXPA8" - Expansin in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EXPA8Expansin (257 aa)    
Predicted Functional Partners:
Solyc11g040140.1.1
Xyloglucan endotransglucosylase/hydrolase ; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (300 aa)
     
   
  0.517
ARF19
Auxin response factor 19 ; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (1112 aa)
           
  0.512
CycA3
Cyclin A3 (378 aa)
           
  0.469
PG2
Polygalacturonase-2 ; Catalytic subunit of the polygalacturonase isozyme 1 and 2 (PG1 and PG2). Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation. The depolymerization and solubilization of cell wall polyuronides mediated by PG2 during ripening seems to be limited by the beta subunit GP1, probably by recruiting PG2 to form PG1 (457 aa)
           
  0.410
Solyc09g098270.2.1
Uncharacterized protein (433 aa)
           
  0.410
Solyc04g025440.2.1
Uncharacterized protein (460 aa)
           
  0.410
PS-2
Dehiscence polygalacturonase (392 aa)
           
  0.410
Solyc01g087280.1.1
Uncharacterized protein (425 aa)
           
  0.410
Cel1
Endo-1,4-beta-glucanase (501 aa)
           
  0.402
Solyc06g066120.2.1
Uncharacterized protein (486 aa)
           
  0.402
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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