STRINGSTRING
Solyc12g095830.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g095830.1.1" - Uncharacterized protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g095830.1.1Uncharacterized protein (705 aa)    
Predicted Functional Partners:
Solyc07g056550.2.1
Uncharacterized protein (398 aa)
       
  0.927
Solyc01g007120.2.1
Uncharacterized protein (457 aa)
     
  0.865
DDB1
DNA damage-binding protein 1 ; Component of light signal transduction machinery. Involved in fruit pigmentation and fruit nutritional quality. Acts as a negative regulator of fruit pigmentation. Probably acts by participating in the CDD complex, a complex probably required to regulate the activity of ubiquitin conjugating enzymes. Repression of photomorphogenesis is probably mediated by ubiquitination and subsequent degradation of photomorphogenesis-promoting factors such as HY5 (1095 aa)
     
      0.855
Solyc04g082330.2.1
Uncharacterized protein (791 aa)
     
  0.824
Solyc05g018300.2.1
Uncharacterized protein (1080 aa)
     
  0.811
Solyc04g081030.2.1
Uncharacterized protein (517 aa)
       
  0.741
Solyc11g032010.1.1
Uncharacterized protein (202 aa)
     
  0.706
Solyc09g011060.2.1
Clade IV lectin receptor kinase (832 aa)
     
  0.703
Solyc04g006930.2.1
Uncharacterized protein (800 aa)
     
  0.702
Solyc12g062870.1.1
Uncharacterized protein (410 aa)
     
  0.651
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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