• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Solyc12g095960.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g095960.1.1" - KH domain-containing protein in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g095960.1.1KH domain-containing protein (288 aa)    
Predicted Functional Partners:
101263462
annotation not available (436 aa)
       
 
  0.850
101267058
Uncharacterized protein; Ribosomal RNA processing 4 (325 aa)
     
      0.839
101263627
Flowering time control protein-related / FCA gamma-related (430 aa)
       
 
  0.785
101267262
Uncharacterized protein; RNA binding;abscisic acid binding (743 aa)
       
 
  0.785
Solyc03g032140.2.1
annotation not available (240 aa)
     
 
  0.761
Solyc00g007070.2.1
annotation not available (264 aa)
     
 
  0.761
101245484
Uncharacterized protein; P-loop containing nucleoside triphosphate hydrolases superfamily protein (267 aa)
           
  0.744
101259991
RNA-binding KH domain-containing protein (282 aa)
     
 
  0.686
101268791
RNA-binding KH domain-containing protein (282 aa)
     
 
  0.686
101265255
annotation not available (295 aa)
     
 
  0.686
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
Server load: low (8%) [HD]