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TAPG4 protein (Solanum lycopersicum) - STRING interaction network
"TAPG4" - Polygalacturonase 4 in Solanum lycopersicum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAPG4Polygalacturonase 4 (387 aa)    
Predicted Functional Partners:
cel5
Endoglucanase; Endo-1,4-beta-glucanase (497 aa)
           
  0.797
Solyc01g099960.2.1
Pectinesterase; Plant invertase/pectin methylesterase inhibitor superfamily (574 aa)
   
   
  0.781
Solyc00g027770.2.1
Pectin methylesterase 31 (317 aa)
   
   
  0.779
101261743
annotation not available (387 aa)
   
   
  0.773
Solyc07g017600.2.1
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin (539 aa)
   
   
  0.763
101268391
annotation not available (347 aa)
   
 
  0.761
104648548
annotation not available (356 aa)
   
   
  0.761
101256106
annotation not available (357 aa)
   
   
  0.760
101244818
Pectinesterase 11 (343 aa)
   
 
  0.759
101266973
annotation not available (560 aa)
   
   
  0.750
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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