STRINGSTRING
Solyc12g099160.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g099160.1.1" - Carboxypeptidase in Solanum lycopersicum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g099160.1.1Carboxypeptidase (479 aa)    
Predicted Functional Partners:
Solyc04g079420.2.1
Uncharacterized protein (829 aa)
       
      0.890
Solyc11g040330.1.1
Uncharacterized protein (549 aa)
           
  0.704
Solyc10g074820.1.1
Uncharacterized protein (316 aa)
           
  0.704
Solyc06g072230.1.1
Uncharacterized protein (200 aa)
           
  0.704
Solyc06g072220.1.1
Uncharacterized protein (211 aa)
           
  0.704
Solyc02g086700.2.1
Uncharacterized protein (345 aa)
           
  0.700
P4
Pathogenesis-related leaf protein 4 ; Probably involved in the defense reaction of plants against pathogens (159 aa)
           
  0.699
XSP10
Xylem sap protein 10 kDa (125 aa)
           
  0.699
ER69
Ethylene-responsive methionine synthase (765 aa)
           
  0.691
Solyc12g098100.1.1
Uncharacterized protein (1097 aa)
       
 
  0.640
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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