STRINGSTRING
Solyc12g099740.1.1 protein (Solanum lycopersicum) - STRING interaction network
"Solyc12g099740.1.1" - Uncharacterized protein in Solanum lycopersicum
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Solyc12g099740.1.1Uncharacterized protein (1025 aa)    
Predicted Functional Partners:
Solyc09g065190.1.1
Uncharacterized protein (534 aa)
     
  0.691
Solyc01g079680.2.1
Uncharacterized protein (550 aa)
     
  0.691
Solyc06g082720.1.1
Uncharacterized protein (203 aa)
     
  0.680
RAN1
GTP-binding nuclear protein Ran1 ; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (By similarity) (221 aa)
     
  0.680
RAN2
GTP-binding nuclear protein Ran2 ; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (By similarity) (221 aa)
     
  0.680
Solyc01g104680.2.1
GTP-binding nuclear protein Ran2 (221 aa)
     
  0.680
Solyc01g109070.2.1
Uncharacterized protein (81 aa)
       
 
  0.646
UBI3
Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin tha [...] (156 aa)
       
  0.529
RanBP1
Ran binding protein-1 (224 aa)
     
  0.480
Solyc06g082120.2.1
Uncharacterized protein (211 aa)
     
  0.480
Your Current Organism:
Solanum lycopersicum
NCBI taxonomy Id: 4081
Other names: Lycopersicon, Lycopersicon (Mill.) Seithe, Lycopersicon esculentum, Lycopersicon esculentum Mill., Lycopersicon esculentum var. esculentum, Lycopersicon lycopersicum, S. lycopersicum, Solanum esculentum, Solanum esculentum Dunal, Solanum lycopersicum, Solanum lycopersicum L., tomato
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