STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104214856Uncharacterized protein LOC104214856; Belongs to the universal ribosomal protein uL16 family. (179 aa)    
Predicted Functional Partners:
rpl2
50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.
 
 0.983
LOC104230889
50S ribosomal protein L5, chloroplastic.
 
 0.982
rps12
30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits.
 
 
 0.978
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
  
 
 0.972
rps2
30S ribosomal protein S2, chloroplastic.
 
 
 0.971
rpl14
50S ribosomal protein L14, chloroplastic; Binds to 23S rRNA.
 
 0.967
rpl22
50S ribosomal protein L22, chloroplastic; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome; Belongs to the universal ribosomal protein uL22 family.
  
 0.967
rps19
30S ribosomal protein S19, chloroplastic; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
  
 
 0.963
rpl36
50S ribosomal protein L36, chloroplastic.
  
 
 0.960
LOC104218292
Uncharacterized protein LOC104218292; Belongs to the universal ribosomal protein uS5 family.
  
 
 0.958
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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