STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104219519NAC domain-containing protein 100-like. (325 aa)    
Predicted Functional Partners:
LOC104213692
Uncharacterized protein LOC104213692.
  
     0.529
LOC104242132
DELLA protein GAI-like; Belongs to the GRAS family.
  
 
   0.525
LOC104247001
LOB domain-containing protein 37.
  
     0.522
LOC104249109
Transcription factor TCP9-like.
  
     0.520
LOC104227931
Uncharacterized protein LOC104227931.
  
     0.515
LOC104224217
Auxin-induced protein 6B-like.
  
     0.514
LOC104215233
Uncharacterized protein LOC104215233.
  
     0.509
LOC104244356
DELLA protein GAI-like; Belongs to the GRAS family.
  
 
   0.505
LOC104228862
Probable methyltransferase PMT26.
  
 
  0.502
LOC104244926
Probable methyltransferase PMT27.
  
  
  0.502
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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