STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104222444Growth-regulating factor 3-like. (365 aa)    
Predicted Functional Partners:
LOC104243951
Probable VAMP-like protein At1g33475.
  
     0.503
LOC104224595
Uncharacterized protein LOC104224595.
  
     0.466
LOC104211872
Probable VAMP-like protein At1g33475.
  
     0.463
LOC104225495
Uncharacterized protein LOC104225495.
  
     0.452
LOC104228788
Uncharacterized protein LOC104228788.
  
     0.444
LOC104225496
Uncharacterized protein LOC104225496.
  
     0.443
LOC104242159
Uncharacterized protein LOC104242159.
  
     0.436
LOC104217073
Uncharacterized protein LOC104217073 isoform X1.
  
     0.429
LOC104240100
GRF1-interacting factor 1.
    
 
 0.428
LOC104247408
GRF1-interacting factor 1-like.
    
 
 0.428
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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