STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104222446LOB domain-containing protein 14-like. (233 aa)    
Predicted Functional Partners:
LOC104239005
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
    
 0.621
LOC104247298
COBRA-like protein 7.
     
 0.588
LOC104219291
Histone-lysine N-methyltransferase ATXR2 isoform X1.
   
 0.547
LOC104232264
Uncharacterized protein LOC104232264 isoform X1.
   
 0.542
LOC104249324
Chromatin structure-remodeling complex protein SYD.
   
 0.542
LOC104230957
GEM-like protein 4.
  
     0.522
LOC104237052
Transcription factor E2FA isoform X1.
    
 0.522
LOC104243617
WUSCHEL-related homeobox 11 isoform X1.
    
 
 0.514
LOC104222474
Aberrant root formation protein 4 isoform X1.
   
  
 0.513
LOC104249574
Serine/threonine-protein kinase ULK3; Belongs to the protein kinase superfamily.
    
 0.501
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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