STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104229851NAC domain-containing protein 78-like. (405 aa)    
Predicted Functional Partners:
LOC104228668
F-box/kelch-repeat protein At3g23880-like.
  
     0.512
LOC104214234
F-box/kelch-repeat protein At3g23880-like.
  
     0.504
LOC104242602
Uncharacterized protein LOC104242602.
  
     0.504
LOC104230659
Uncharacterized protein LOC104230659.
  
     0.500
LOC104248663
Scarecrow-like protein 15; Belongs to the GRAS family.
  
     0.496
LOC104240050
F-box/kelch-repeat protein At3g06240-like.
  
     0.489
LOC104217512
Protein RALF-like 24.
  
     0.487
LOC104216265
F-box/kelch-repeat protein At3g23880-like.
  
     0.478
LOC104248154
F-box/kelch-repeat protein At3g23880-like.
  
     0.476
LOC104238325
F-box/kelch-repeat protein At3g23880-like.
  
     0.472
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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