STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104232079NF-X1-type zinc finger protein NFXL2. (874 aa)    
Predicted Functional Partners:
LOC104221724
Peptidylprolyl isomerase.
    
 
 0.781
LOC104218363
Uncharacterized protein LOC104218363.
   
    0.605
LOC104238688
Parafibromin.
   
  
 0.599
LOC104212052
DNA primase; Belongs to the eukaryotic-type primase small subunit family.
   
    0.541
LOC104218989
60S ribosomal protein L5.
    
   0.533
LOC104224653
60S ribosomal protein L5-like.
    
   0.533
LOC104212185
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
    
   0.520
LOC104239566
60S ribosomal protein L37a.
    
   0.520
LOC104244315
60S ribosomal protein L39-3.
    
   0.513
LOC104222608
60S ribosomal protein L6-like isoform X1.
    
   0.511
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.