LOC104234339 protein (Nicotiana sylvestris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104234339

Squamosa promoter-binding-like protein 6. (543 aa)

Predicted Functional Partners:

LOC104227920

0.689

LOC104215021

0.679

LOC104226493

0.679

LOC104215561

0.576

LOC104237475

0.576

LOC104214642

0.571

LOC104228308

0.503

LOC104239909

0.498

LOC104210664

0.471

LOC104214032

0.471

Your Current Organism:

Nicotiana sylvestris

NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104210664	LOC104214642	A0A1U7V6P6	A0A1U7VCD3	RING-box protein 1a-like.	LOW QUALITY PROTEIN: protein TONSOKU.	0.544
LOC104210664	LOC104215021	A0A1U7V6P6	A0A1U7VL42	RING-box protein 1a-like.	Uncharacterized protein LOC104215021.	0.522
LOC104210664	LOC104215561	A0A1U7V6P6	A0A1U7VP74	RING-box protein 1a-like.	Small glutamine-rich tetratricopeptide repeat-containing protein beta-like.	0.604
LOC104210664	LOC104226493	A0A1U7V6P6	A0A1U7WRD5	RING-box protein 1a-like.	Uncharacterized protein LOC104226493.	0.522
LOC104210664	LOC104227920	A0A1U7V6P6	A0A1U7WWI3	RING-box protein 1a-like.	E3 ubiquitin-protein ligase PRT1.	0.732
LOC104210664	LOC104228308	A0A1U7V6P6	A0A1U7WP21	RING-box protein 1a-like.	NEDD8-activating enzyme E1 catalytic subunit.	0.798
LOC104210664	LOC104234339	A0A1U7V6P6	A0A1U7X961	RING-box protein 1a-like.	Squamosa promoter-binding-like protein 6.	0.471
LOC104210664	LOC104237475	A0A1U7V6P6	A0A1U7XTX2	RING-box protein 1a-like.	Myotrophin-like.	0.604
LOC104214032	LOC104214642	A0A1U7VAC0	A0A1U7VCD3	RING-box protein 1a-like isoform X1.	LOW QUALITY PROTEIN: protein TONSOKU.	0.544
LOC104214032	LOC104215021	A0A1U7VAC0	A0A1U7VL42	RING-box protein 1a-like isoform X1.	Uncharacterized protein LOC104215021.	0.522
LOC104214032	LOC104215561	A0A1U7VAC0	A0A1U7VP74	RING-box protein 1a-like isoform X1.	Small glutamine-rich tetratricopeptide repeat-containing protein beta-like.	0.604
LOC104214032	LOC104226493	A0A1U7VAC0	A0A1U7WRD5	RING-box protein 1a-like isoform X1.	Uncharacterized protein LOC104226493.	0.522
LOC104214032	LOC104227920	A0A1U7VAC0	A0A1U7WWI3	RING-box protein 1a-like isoform X1.	E3 ubiquitin-protein ligase PRT1.	0.732
LOC104214032	LOC104228308	A0A1U7VAC0	A0A1U7WP21	RING-box protein 1a-like isoform X1.	NEDD8-activating enzyme E1 catalytic subunit.	0.798
LOC104214032	LOC104234339	A0A1U7VAC0	A0A1U7X961	RING-box protein 1a-like isoform X1.	Squamosa promoter-binding-like protein 6.	0.471
LOC104214032	LOC104237475	A0A1U7VAC0	A0A1U7XTX2	RING-box protein 1a-like isoform X1.	Myotrophin-like.	0.604
LOC104214642	LOC104210664	A0A1U7VCD3	A0A1U7V6P6	LOW QUALITY PROTEIN: protein TONSOKU.	RING-box protein 1a-like.	0.544
LOC104214642	LOC104214032	A0A1U7VCD3	A0A1U7VAC0	LOW QUALITY PROTEIN: protein TONSOKU.	RING-box protein 1a-like isoform X1.	0.544
LOC104214642	LOC104215561	A0A1U7VCD3	A0A1U7VP74	LOW QUALITY PROTEIN: protein TONSOKU.	Small glutamine-rich tetratricopeptide repeat-containing protein beta-like.	0.497
LOC104214642	LOC104234339	A0A1U7VCD3	A0A1U7X961	LOW QUALITY PROTEIN: protein TONSOKU.	Squamosa promoter-binding-like protein 6.	0.571