STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
LOC104241799Ribulose bisphosphate carboxylase small chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site. (180 aa)    
Predicted Functional Partners:
rbcL
Ribulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.
  
 
 0.958
LOC104231991
Phosphoribulokinase.
   
 0.912
LOC104236540
Phosphoribulokinase.
   
 0.912
LOC104216150
Phosphoglycolate phosphatase 1B, chloroplastic-like.
   
 
 0.904
LOC104230902
Phosphoglycolate phosphatase.
   
 
 0.903
LOC104239031
D-glycerate 3-kinase, chloroplastic.
     
  0.900
LOC104239560
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
     
 0.692
LOC104215547
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
     
 0.663
LOC104227335
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
     
 0.663
LOC104238651
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
     
 0.663
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.