STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104247664NAC domain-containing protein 100 isoform X1. (343 aa)    
Predicted Functional Partners:
LOC104227931
Uncharacterized protein LOC104227931.
  
     0.502
LOC104240029
RPM1-interacting protein 4-like isoform X1.
  
     0.501
LOC104244013
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
 
   0.485
LOC104216788
Uncharacterized protein LOC104216788.
  
     0.481
LOC104213692
Uncharacterized protein LOC104213692.
  
     0.480
LOC104216164
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
 
   0.479
LOC104220953
Uncharacterized protein LOC104220953.
  
     0.476
LOC104211285
Uncharacterized protein LOC104211285.
  
     0.473
LOC104242132
DELLA protein GAI-like; Belongs to the GRAS family.
  
 
   0.472
LOC104247001
LOB domain-containing protein 37.
  
     0.472
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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