STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107794663Extensin-2-like. (836 aa)    
Predicted Functional Partners:
LOC107777060
Chromatin structure-remodeling complex protein SYD-like isoform X1.
   
  0.535
LOC107795710
Protein NLP9-like.
   
  0.535
LOC107818563
Chromatin structure-remodeling complex protein SYD-like isoform X1.
   
  0.535
ATG1c
Serine/threonine-protein kinase ATG1t-like.
    
 0.470
LOC107803487
Serine/threonine-protein kinase ATG1t-like; Belongs to the protein kinase superfamily.
    
 0.470
LOC107781895
Protein RBL-like isoform X1.
    
 0.455
LOC107817105
Protein RBL-like isoform X1.
    
 0.455
LOC107828915
Protein TRAUCO-like.
    
 0.453
LOC107832330
Protein TRAUCO-like.
    
 0.453
LOC107766309
Ankyrin repeat domain-containing protein 29.
    
  0.413
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.