STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107804891histidine--tRNA ligase, chloroplastic/mitochondrial-like isoform X1. (370 aa)    
Predicted Functional Partners:
eIF2alpha
Eukaryotic translation initiation factor 2 subunit alpha-like.
   
 0.904
LOC107781436
ATP phosphoribosyltransferase 2, chloroplastic-like.
  
 0.806
LOC107792258
ATP phosphoribosyltransferase 2, chloroplastic-like.
  
 0.806
LOC107780548
methionine--tRNA ligase, cytoplasmic-like; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.659
LOC107800068
Probable methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.659
LOC107806349
methionine--tRNA ligase, cytoplasmic-like.
  
 
 0.659
LOC107807152
methionine--tRNA ligase, cytoplasmic-like; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.659
LOC107821583
Probable methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.659
atpB
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 
 0.638
LOC107765718
Eukaryotic translation initiation factor 2 subunit alpha-like.
   
 0.630
Your Current Organism:
Nicotiana tabacum
NCBI taxonomy Id: 4097
Other names: American tobacco, N. tabacum, Nicotiana tabacum L., common tobacco, tobacco
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