STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B9Z65_6078DNA-directed RNA polymerase I subunit rpa49. (434 aa)    
Predicted Functional Partners:
B9Z65_5469
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.999
B9Z65_3045
RPA43_OB domain-containing protein.
   
 0.999
B9Z65_6438
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.999
B9Z65_6518
Uncharacterized protein.
   
 0.999
B9Z65_8971
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
   
 0.999
B9Z65_3773
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 0.999
B9Z65_791
DNA-directed RNA polymerases I and III subunit RPAC1.
   
 0.999
B9Z65_2476
DNA-directed RNA polymerase I, II, and III subunit RPABC4.
   
 0.998
B9Z65_6781
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
   
 0.998
B9Z65_6119
DNA-directed RNA polymerases I and III subunit RPAC2.
   
 0.989
Your Current Organism:
Elsinoe australis
NCBI taxonomy Id: 40998
Other names: E. australis, Sphaceloma australis
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