STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yycFTranscriptional regulatory protein YycF. (229 aa)    
Predicted Functional Partners:
senX3
Signal-transduction histidine kinase senX3.
  0.974
yycG_2
Sensor histidine kinase YycG.
 0.894
cusS
Sensor kinase CusS.
  
  0.888
phoR_3
Alkaline phosphatase synthesis sensor protein phoR.
  0.878
phoR_9
Alkaline phosphatase synthesis sensor protein phoR.
  0.867
phoR_7
Alkaline phosphatase synthesis sensor protein phoR.
 0.855
CUP23685.1
Spore germination protein.
 
     0.824
zraS
Sensor protein ZraS.
 
 
  0.819
phoP_3
Alkaline phosphatase synthesis transcriptional regulatory protein phoP.
  
  
 
0.816
CUP10522.1
Blue-light-activated protein.
 
 0.815
Your Current Organism:
Coprococcus comes
NCBI taxonomy Id: 410072
Other names: ATCC 27758, C. comes, VPI C1-38
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.