STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
irtAIron import ATP-binding/permease protein IrtA. (594 aa)    
Predicted Functional Partners:
ykoD
Putative HMP/thiamine import ATP-binding protein YkoD.
  
 
0.959
tcyN
L-cystine import ATP-binding protein TcyN.
 
     
0.899
pstB3_2
Phosphate import ATP-binding protein PstB 3; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.899
artM_2
Arginine transport ATP-binding protein ArtM.
 
     
0.897
potA_2
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
     
0.892
ecfT_2
Energy-coupling factor transporter transmembrane protein EcfT.
 
  
  0.877
CUP41331.1
Conserved hypothetical integral membrane protein.
 
     0.876
ftsE_1
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
     
0.835
cfaD
Colonization factor antigen I subunit D.
 
     0.831
CUP41246.1
Putative multidrug export ATP-binding/permease protein SAV1866.
 
    
0.818
Your Current Organism:
Coprococcus comes
NCBI taxonomy Id: 410072
Other names: ATCC 27758, C. comes, VPI C1-38
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