STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mlab_0562Hypothetical protein. (79 aa)    
Predicted Functional Partners:
Mlab_0561
Membrane protein-like protein.
  
    0.875
Mlab_0565
Membrane protein-like protein.
  
    0.858
Mlab_0564
Hypothetical protein.
  
    0.848
Mlab_0567
Membrane protein-like protein.
  
    0.847
Mlab_0566
Membrane protein-like protein.
  
    0.834
Mlab_0563
Hypothetical protein.
       0.806
Mlab_0570
Hypothetical protein.
  
    0.654
Mlab_0568
PFAM: respiratory-chain NADH dehydrogenase, subunit 1.
  
    0.628
Mlab_0571
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit.
  
    0.559
Mlab_0572
NADH dehydrogenase (quinone); PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa.
       0.503
Your Current Organism:
Methanocorpusculum labreanum
NCBI taxonomy Id: 410358
Other names: M. labreanum Z, Methanocorpusculum labreanum Z, Methanocorpusculum labreanum str. Z, Methanocorpusculum labreanum strain Z
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