Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Mlab_0435 | Mlab_0924 | Mlab_0435 | Mlab_0924 | PFAM: Protein of unknown function DUF460. | Nmd3; PFAM: NMD3. | 0.445 |
Mlab_0435 | Mlab_1147 | Mlab_0435 | Mlab_1147 | PFAM: Protein of unknown function DUF460. | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | 0.525 |
Mlab_0435 | Mlab_1173 | Mlab_0435 | Mlab_1173 | PFAM: Protein of unknown function DUF460. | Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein. | 0.604 |
Mlab_0924 | Mlab_0435 | Mlab_0924 | Mlab_0435 | Nmd3; PFAM: NMD3. | PFAM: Protein of unknown function DUF460. | 0.445 |
Mlab_0924 | Mlab_1147 | Mlab_0924 | Mlab_1147 | Nmd3; PFAM: NMD3. | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | 0.592 |
Mlab_0924 | Mlab_1173 | Mlab_0924 | Mlab_1173 | Nmd3; PFAM: NMD3. | Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein. | 0.588 |
Mlab_1146 | Mlab_1147 | Mlab_1146 | Mlab_1147 | Hypothetical protein. | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | 0.762 |
Mlab_1146 | Mlab_1148 | Mlab_1146 | Mlab_1148 | Hypothetical protein. | Hypothetical protein. | 0.553 |
Mlab_1146 | Mlab_1149 | Mlab_1146 | Mlab_1149 | Hypothetical protein. | PFAM: peptidylprolyl isomerase, FKBP-type. | 0.412 |
Mlab_1147 | Mlab_0435 | Mlab_1147 | Mlab_0435 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | PFAM: Protein of unknown function DUF460. | 0.525 |
Mlab_1147 | Mlab_0924 | Mlab_1147 | Mlab_0924 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | Nmd3; PFAM: NMD3. | 0.592 |
Mlab_1147 | Mlab_1146 | Mlab_1147 | Mlab_1146 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | Hypothetical protein. | 0.762 |
Mlab_1147 | Mlab_1148 | Mlab_1147 | Mlab_1148 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | Hypothetical protein. | 0.560 |
Mlab_1147 | Mlab_1149 | Mlab_1147 | Mlab_1149 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | PFAM: peptidylprolyl isomerase, FKBP-type. | 0.569 |
Mlab_1147 | Mlab_1173 | Mlab_1147 | Mlab_1173 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein. | 0.597 |
Mlab_1147 | moaA | Mlab_1147 | Mlab_1255 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | GTP cyclohydrolase subunit MoaA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate; Belongs to the radical SAM superfamily. MoaA family. | 0.818 |
Mlab_1147 | mptA | Mlab_1147 | Mlab_0018 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | GTP cyclohydrolase MptA; Converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate, the first intermediate in the biosynthesis of coenzyme methanopterin. | 0.804 |
Mlab_1147 | ndk | Mlab_1147 | Mlab_1500 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | 0.902 |
Mlab_1147 | ribB | Mlab_1147 | Mlab_0396 | TIGRFAM: putative adenylyl cyclase CyaB; PFAM: adenylate cyclase. | 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate. | 0.803 |
Mlab_1148 | Mlab_1146 | Mlab_1148 | Mlab_1146 | Hypothetical protein. | Hypothetical protein. | 0.553 |
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