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trmY protein (Methanocorpusculum labreanum) - STRING interaction network
"trmY" - tRNA in Methanocorpusculum labreanum
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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trmYtRNA (pseudouridine(54)-N(1))-methyltransferase; Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs; Belongs to the methyltransferase superfamily. TrmY family (195 aa)    
Predicted Functional Partners:
pus10
tRNA pseudouridine synthase Pus10; Responsible for synthesis of pseudouridine from uracil- 54 and uracil-55 in the psi GC loop of transfer RNAs (411 aa)
 
     
  0.975
rpl21e
PFAM- ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family (98 aa)
              0.903
ksgA
Probable ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (258 aa)
 
          0.879
Mlab_1570
PFAM- Protein of unknown function DUF655 (192 aa)
              0.861
Mlab_1569
DNA-directed RNA polymerase, subunit F; PFAM- RNA polymerase Rpb4 (122 aa)
 
          0.834
pfdA
Prefoldin subunit alpha; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding (147 aa)
 
          0.806
Mlab_1572
TIGRFAM- putative methylase; PFAM- methyltransferase small (193 aa)
              0.759
rpl39e
PFAM- ribosomal protein L39e; Belongs to the eukaryotic ribosomal protein eL39 family (50 aa)
 
          0.719
srp54
Signal recognition particle 54 kDa protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY; Belongs to the GTP-binding SRP family. SRP54 subfamily (446 aa)
              0.661
ftsY
Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) (337 aa)
              0.658
Your Current Organism:
Methanocorpusculum labreanum
NCBI taxonomy Id: 410358
Other names: M. labreanum Z, Methanocorpusculum labreanum, Methanocorpusculum labreanum Z, Methanocorpusculum labreanum str. Z, Methanocorpusculum labreanum strain Z
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