STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pcal_10732,3-di-O-geranylgeranylglyceryl phosphate reductase; TIGRFAM: geranylgeranyl reductase; PFAM: FAD dependent oxidoreductase; KEGG: pai:PAE2159 hypothetical protein. (452 aa)    
Predicted Functional Partners:
Pcal_2134
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pai:PAE0723 ferredoxin like protein.
 
 
 0.873
ribK
CTP-dependent riboflavin kinase; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN); Belongs to the archaeal riboflavin kinase family.
 
     0.827
Pcal_1072
PFAM: class II aldolase/adducin family protein; KEGG: pai:PAE2158 fuculose-1-phosphate aldolase.
  
    0.795
Pcal_1070
PFAM: protein of unknown function DUF87; SMART: AAA ATPase; KEGG: pai:PAE2155 conserved within P.aerophilum.
       0.778
Pcal_2006
PFAM: electron transfer flavoprotein beta-subunit; KEGG: pai:PAE3586 electron transfer flavoprotein beta subunit.
  
 
 0.709
Pcal_2133
PFAM: electron transfer flavoprotein beta-subunit; KEGG: pai:PAE0722 electron transfer flavoprotein beta subunit.
  
 
 0.709
Pcal_1074
PFAM: beta-lactamase domain protein; KEGG: pai:PAE2160 hypothetical metal-dependent hydrolase; Belongs to the UPF0173 family.
       0.696
Pcal_1119
TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase, FAD-binding; KEGG: pai:PAE2989 hypothetical protein.
  
     0.689
Pcal_1069
KEGG: pai:PAE2154 hypothetical protein.
       0.658
Pcal_0555
PFAM: UbiA prenyltransferase; KEGG: pai:PAE1784 hypothetical 4-hydroxybenzoate octaprenyltransferase.
 
  
 0.593
Your Current Organism:
Pyrobaculum calidifontis
NCBI taxonomy Id: 410359
Other names: P. calidifontis JCM 11548, Pyrobaculum calidifontis JCM 11548, Pyrobaculum calidifontis VA1, Pyrobaculum calidifontis str. JCM 11548, Pyrobaculum calidifontis strain JCM 11548
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.